Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gm26368-201ENSMUST00000157826 118 ntBASIC17.49■□□□□ 0.39
Scn4aQ9ER60 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gm8343-201ENSMUST00000182705 994 ntBASIC17.49■□□□□ 0.39
Scn4aQ9ER60 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gm28686-201ENSMUST00000187404 609 ntBASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Gm14921-201ENSMUST00000118643 908 ntBASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Gm15566-201ENSMUST00000121130 590 ntBASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Gm13263-201ENSMUST00000121271 838 ntBASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Gm12453-201ENSMUST00000121981 331 ntBASIC17.48■□□□□ 0.39
Scn4aQ9ER60 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Gm7985-201ENSMUST00000183329 981 ntBASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Gm9916-201ENSMUST00000192943 1228 ntBASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Gm43912-201ENSMUST00000204352 538 ntBASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 AC166574.4-201ENSMUST00000227165 1937 ntBASIC17.48■□□□□ 0.39
Scn4aQ9ER60 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Scn4aQ9ER60 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Gm44647-201ENSMUST00000207402 428 ntBASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Gm9661-201ENSMUST00000221611 1122 ntBASIC17.47■□□□□ 0.39
Scn4aQ9ER60 AC124433.1-201ENSMUST00000224483 1063 ntBASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 AC162938.1-201ENSMUST00000213140 2323 ntBASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Gm24934-201ENSMUST00000103764 111 ntBASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Gm12856-201ENSMUST00000119471 1293 ntBASIC17.47■□□□□ 0.39
Scn4aQ9ER60 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Gm45410-201ENSMUST00000211331 1093 ntBASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Scn4aQ9ER60 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC17.46■□□□□ 0.39
Scn4aQ9ER60 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms