Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp40Q8BWR4 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp40Q8BWR4 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp40Q8BWR4 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC18■□□□□ 0.47
Usp40Q8BWR4 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC18■□□□□ 0.47
Usp40Q8BWR4 Gm10434-201ENSMUST00000101158 471 ntBASIC18■□□□□ 0.47
Usp40Q8BWR4 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Usp40Q8BWR4 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Usp40Q8BWR4 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC18■□□□□ 0.47
Usp40Q8BWR4 Gm20482-202ENSMUST00000174729 825 ntBASIC18■□□□□ 0.47
Usp40Q8BWR4 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC18■□□□□ 0.47
Usp40Q8BWR4 Gm38000-201ENSMUST00000192390 1215 ntBASIC18■□□□□ 0.47
Usp40Q8BWR4 Gm43416-201ENSMUST00000201916 1015 ntBASIC18■□□□□ 0.47
Usp40Q8BWR4 Gm6082-201ENSMUST00000215204 454 ntBASIC18■□□□□ 0.47
Usp40Q8BWR4 AC093022.1-201ENSMUST00000226949 1072 ntBASIC18■□□□□ 0.47
Usp40Q8BWR4 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp40Q8BWR4 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC18■□□□□ 0.47
Usp40Q8BWR4 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Usp40Q8BWR4 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp40Q8BWR4 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC18■□□□□ 0.47
Usp40Q8BWR4 AC166491.1-201ENSMUST00000227053 2308 ntBASIC18■□□□□ 0.47
Usp40Q8BWR4 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp40Q8BWR4 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Usp40Q8BWR4 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Usp40Q8BWR4 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Gm2420-202ENSMUST00000202224 2249 ntBASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Gm11222-201ENSMUST00000119005 738 ntBASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Gm38092-201ENSMUST00000195600 653 ntBASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Gm19931-201ENSMUST00000198920 368 ntBASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Gm8099-201ENSMUST00000200510 742 ntBASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 AC154595.3-201ENSMUST00000224579 384 ntBASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC17.99■□□□□ 0.47
Usp40Q8BWR4 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 CT485787.1-201ENSMUST00000225617 968 ntBASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Gm44207-201ENSMUST00000204568 1424 ntBASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC17.98■□□□□ 0.47
Usp40Q8BWR4 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Usp40Q8BWR4 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Usp40Q8BWR4 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp40Q8BWR4 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp40Q8BWR4 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp40Q8BWR4 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Usp40Q8BWR4 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC17.97■□□□□ 0.47
Usp40Q8BWR4 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms