Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC11.27□□□□□ -0.6
Col8a1Q00780 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC11.27□□□□□ -0.6
Col8a1Q00780 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col8a1Q00780 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC11.27□□□□□ -0.6
Col8a1Q00780 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC11.27□□□□□ -0.6
Col8a1Q00780 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Col8a1Q00780 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col8a1Q00780 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Col8a1Q00780 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col8a1Q00780 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC11.27□□□□□ -0.61
Col8a1Q00780 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC11.27□□□□□ -0.61
Col8a1Q00780 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC11.27□□□□□ -0.61
Col8a1Q00780 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC11.27□□□□□ -0.61
Col8a1Q00780 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC11.27□□□□□ -0.61
Col8a1Q00780 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC11.27□□□□□ -0.61
Col8a1Q00780 Gm44064-201ENSMUST00000204964 1087 ntBASIC11.27□□□□□ -0.61
Col8a1Q00780 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC11.27□□□□□ -0.61
Col8a1Q00780 AC022775.2-201ENSMUST00000227885 646 ntBASIC11.27□□□□□ -0.61
Col8a1Q00780 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Gm16372-201ENSMUST00000073088 450 ntBASIC11.27□□□□□ -0.61
Col8a1Q00780 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Col8a1Q00780 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Col8a1Q00780 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC11.27□□□□□ -0.61
Col8a1Q00780 Gm14608-201ENSMUST00000120030 1553 ntBASIC11.27□□□□□ -0.61
Col8a1Q00780 Gm8862-201ENSMUST00000198379 1346 ntBASIC11.27□□□□□ -0.61
Col8a1Q00780 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC11.27□□□□□ -0.61
Col8a1Q00780 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col8a1Q00780 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Gm10782-202ENSMUST00000223775 1480 ntBASIC11.26□□□□□ -0.61
Col8a1Q00780 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Gm14350-201ENSMUST00000116642 640 ntBASIC11.26□□□□□ -0.61
Col8a1Q00780 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Gm44967-201ENSMUST00000207047 631 ntBASIC11.26□□□□□ -0.61
Col8a1Q00780 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC11.26□□□□□ -0.61
Col8a1Q00780 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC11.26□□□□□ -0.61
Col8a1Q00780 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col8a1Q00780 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms