Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Msx1P13297 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Msx1P13297 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Gm16342-201ENSMUST00000124025 1025 ntBASIC12.62□□□□□ -0.39
Msx1P13297 Gm12249-201ENSMUST00000132323 719 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Gm2639-201ENSMUST00000156881 1297 ntBASIC12.62□□□□□ -0.39
Msx1P13297 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 1700029E06Rik-201ENSMUST00000189036 757 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC12.62□□□□□ -0.39
Msx1P13297 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC12.62□□□□□ -0.39
Msx1P13297 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC12.62□□□□□ -0.39
Msx1P13297 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC12.62□□□□□ -0.39
Msx1P13297 AC154276.1-201ENSMUST00000228874 1299 ntBASIC12.62□□□□□ -0.39
Msx1P13297 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Msx1P13297 Acot6-202ENSMUST00000222921 3622 ntBASIC12.62□□□□□ -0.39
Msx1P13297 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC12.62□□□□□ -0.39
Msx1P13297 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Msx1P13297 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Msx1P13297 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Msx1P13297 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Msx1P13297 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC12.62□□□□□ -0.39
Msx1P13297 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Msx1P13297 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
Msx1P13297 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC12.61□□□□□ -0.39
Msx1P13297 Gm21038-201ENSMUST00000222205 1383 ntBASIC12.61□□□□□ -0.39
Msx1P13297 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Gm12752-201ENSMUST00000121657 811 ntBASIC12.61□□□□□ -0.39
Msx1P13297 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC12.61□□□□□ -0.39
Msx1P13297 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC12.61□□□□□ -0.39
Msx1P13297 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Vmn1r185-201ENSMUST00000171039 1144 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Msx1P13297 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12.61□□□□□ -0.39
Msx1P13297 Gm5069-202ENSMUST00000192714 1011 ntBASIC12.61□□□□□ -0.39
Msx1P13297 Gm44397-201ENSMUST00000195950 113 ntBASIC12.61□□□□□ -0.39
Msx1P13297 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC12.61□□□□□ -0.39
Msx1P13297 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 AC154595.3-201ENSMUST00000224579 384 ntBASIC12.61□□□□□ -0.39
Msx1P13297 CU024892.2-201ENSMUST00000224608 832 ntBASIC12.61□□□□□ -0.39
Msx1P13297 Prl7a1-203ENSMUST00000224852 1283 ntBASIC12.61□□□□□ -0.39
Msx1P13297 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Prl7a1-201ENSMUST00000006659 940 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Msx1P13297 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Msx1P13297 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msx1P13297 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC12.61□□□□□ -0.39
Msx1P13297 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC12.61□□□□□ -0.39
Msx1P13297 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 56.2 ms