Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
RaraP11416 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC14.28□□□□□ -0.12
RaraP11416 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC14.28□□□□□ -0.12
RaraP11416 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
RaraP11416 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
RaraP11416 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC14.28□□□□□ -0.12
RaraP11416 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC14.28□□□□□ -0.12
RaraP11416 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC14.28□□□□□ -0.12
RaraP11416 Gm7730-201ENSMUST00000212486 454 ntBASIC14.28□□□□□ -0.12
RaraP11416 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
RaraP11416 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC14.28□□□□□ -0.12
RaraP11416 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC14.28□□□□□ -0.12
RaraP11416 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
RaraP11416 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC14.27□□□□□ -0.12
RaraP11416 Gm38385-201ENSMUST00000194454 2351 ntBASIC14.27□□□□□ -0.12
RaraP11416 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC14.27□□□□□ -0.12
RaraP11416 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RaraP11416 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RaraP11416 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RaraP11416 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RaraP11416 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
RaraP11416 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.27□□□□□ -0.12
RaraP11416 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.27□□□□□ -0.12
RaraP11416 AC096628.2-201ENSMUST00000225443 1413 ntBASIC14.27□□□□□ -0.12
RaraP11416 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RaraP11416 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
RaraP11416 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 Gm31326-201ENSMUST00000191856 1048 ntBASIC14.27□□□□□ -0.13
RaraP11416 Gm19931-201ENSMUST00000198920 368 ntBASIC14.27□□□□□ -0.13
RaraP11416 Gm45195-201ENSMUST00000205597 1008 ntBASIC14.27□□□□□ -0.13
RaraP11416 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.13
RaraP11416 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC14.27□□□□□ -0.13
RaraP11416 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
RaraP11416 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
RaraP11416 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
RaraP11416 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RaraP11416 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
RaraP11416 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
RaraP11416 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Syt7-204ENSMUST00000223586 1344 ntBASIC14.26□□□□□ -0.13
RaraP11416 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Gm6447-201ENSMUST00000118905 835 ntBASIC14.26□□□□□ -0.13
RaraP11416 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC14.26□□□□□ -0.13
RaraP11416 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC14.26□□□□□ -0.13
RaraP11416 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RaraP11416 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC14.26□□□□□ -0.13
RaraP11416 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC14.26□□□□□ -0.13
RaraP11416 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC14.26□□□□□ -0.13
RaraP11416 AC192088.1-201ENSMUST00000227561 301 ntBASIC14.26□□□□□ -0.13
RaraP11416 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC14.26□□□□□ -0.13
RaraP11416 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC14.26□□□□□ -0.13
RaraP11416 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms