Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Col3a1P08121 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Col3a1P08121 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Col3a1P08121 AC238940.1-201ENSMUST00000225106 1858 ntBASIC15.56■□□□□ 0.08
Col3a1P08121 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC15.56■□□□□ 0.08
Col3a1P08121 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Col3a1P08121 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC15.56■□□□□ 0.08
Col3a1P08121 AC113441.2-201ENSMUST00000221538 1468 ntBASIC15.56■□□□□ 0.08
Col3a1P08121 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Col3a1P08121 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC15.55■□□□□ 0.08
Col3a1P08121 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC15.55■□□□□ 0.08
Col3a1P08121 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC15.55■□□□□ 0.08
Col3a1P08121 Gm12012-201ENSMUST00000118857 1066 ntBASIC15.55■□□□□ 0.08
Col3a1P08121 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Col3a1P08121 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC15.55■□□□□ 0.08
Col3a1P08121 Gm31256-201ENSMUST00000194705 506 ntBASIC15.55■□□□□ 0.08
Col3a1P08121 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
Col3a1P08121 Gm18615-201ENSMUST00000222919 1031 ntBASIC15.55■□□□□ 0.08
Col3a1P08121 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Col3a1P08121 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Col3a1P08121 Gm6198-201ENSMUST00000191337 2929 ntBASIC15.55■□□□□ 0.08
Col3a1P08121 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Col3a1P08121 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC15.55■□□□□ 0.08
Col3a1P08121 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col3a1P08121 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC15.54■□□□□ 0.08
Col3a1P08121 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC15.54■□□□□ 0.08
Col3a1P08121 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Gm26956-201ENSMUST00000182176 986 ntBASIC15.54■□□□□ 0.08
Col3a1P08121 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC15.54■□□□□ 0.08
Col3a1P08121 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC15.54■□□□□ 0.08
Col3a1P08121 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Gm13097-201ENSMUST00000210722 397 ntBASIC15.54■□□□□ 0.08
Col3a1P08121 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC15.54■□□□□ 0.08
Col3a1P08121 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Nsd1-205ENSMUST00000224693 852 ntBASIC15.54■□□□□ 0.08
Col3a1P08121 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Col3a1P08121 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Col3a1P08121 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Grk6-205ENSMUST00000224653 2976 ntBASIC15.54■□□□□ 0.08
Col3a1P08121 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC15.54■□□□□ 0.08
Col3a1P08121 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC15.54■□□□□ 0.08
Col3a1P08121 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Col3a1P08121 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col3a1P08121 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Col3a1P08121 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC15.53■□□□□ 0.08
Col3a1P08121 AC148324.1-201ENSMUST00000219034 4240 ntBASIC15.53■□□□□ 0.08
Col3a1P08121 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Col3a1P08121 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col3a1P08121 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC15.53■□□□□ 0.08
Col3a1P08121 Gm12997-201ENSMUST00000120207 640 ntBASIC15.53■□□□□ 0.08
Col3a1P08121 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC15.53■□□□□ 0.08
Col3a1P08121 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC15.53■□□□□ 0.08
Col3a1P08121 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC15.53■□□□□ 0.08
Col3a1P08121 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms