Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Slc45a4-207ENSMUST00000151288 7509 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Wnk1-204ENSMUST00000088646 8364 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Olfr46-203ENSMUST00000214180 7750 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Gm14452-201ENSMUST00000118680 1632 ntBASIC10.91□□□□□ -0.66
Hmgb3O54879 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC10.91□□□□□ -0.66
Hmgb3O54879 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Loxhd1-202ENSMUST00000096547 6595 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Gm28323-201ENSMUST00000186817 2499 ntBASIC10.91□□□□□ -0.66
Hmgb3O54879 Cacna1e-207ENSMUST00000211821 6765 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 AC114543.1-201ENSMUST00000226451 1558 ntBASIC10.9□□□□□ -0.66
Hmgb3O54879 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Syt11-203ENSMUST00000107505 5020 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 BC001981-202ENSMUST00000191393 1545 ntBASIC10.9□□□□□ -0.66
Hmgb3O54879 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Kif14-201ENSMUST00000047817 8770 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Hmgb3O54879 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 AC137842.1-201ENSMUST00000227896 2064 ntBASIC10.9□□□□□ -0.66
Hmgb3O54879 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC10.9□□□□□ -0.66
Hmgb3O54879 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC10.9□□□□□ -0.66
Hmgb3O54879 Gm12350-201ENSMUST00000121208 462 ntBASIC10.9□□□□□ -0.66
Hmgb3O54879 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC10.9□□□□□ -0.66
Hmgb3O54879 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC10.9□□□□□ -0.66
Hmgb3O54879 AC166341.4-201ENSMUST00000220625 123 ntBASIC10.9□□□□□ -0.66
Hmgb3O54879 AC154572.2-201ENSMUST00000225105 997 ntBASIC10.9□□□□□ -0.66
Hmgb3O54879 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC10.9□□□□□ -0.66
Hmgb3O54879 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 AC159196.2-201ENSMUST00000224082 1622 ntBASIC10.9□□□□□ -0.66
Hmgb3O54879 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC10.9□□□□□ -0.66
Hmgb3O54879 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Hmgb3O54879 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC10.9□□□□□ -0.66
Hmgb3O54879 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Hmgb3O54879 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Hmgb3O54879 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Pck2-205ENSMUST00000226352 2784 ntBASIC10.89□□□□□ -0.67
Hmgb3O54879 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Hmgb3O54879 Slc7a1-201ENSMUST00000048116 7179 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Gm44241-201ENSMUST00000203230 1662 ntBASIC10.89□□□□□ -0.67
Hmgb3O54879 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Hmgb3O54879 Tnxb-201ENSMUST00000087399 12209 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Hmgb3O54879 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC10.89□□□□□ -0.67
Hmgb3O54879 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC10.89□□□□□ -0.67
Hmgb3O54879 Gm6222-201ENSMUST00000120787 396 ntBASIC10.89□□□□□ -0.67
Hmgb3O54879 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC10.89□□□□□ -0.67
Hmgb3O54879 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC10.89□□□□□ -0.67
Hmgb3O54879 Gm37714-201ENSMUST00000194742 342 ntBASIC10.89□□□□□ -0.67
Hmgb3O54879 Gm44719-201ENSMUST00000206404 149 ntBASIC10.89□□□□□ -0.67
Hmgb3O54879 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC10.89□□□□□ -0.67
Hmgb3O54879 AC158529.1-201ENSMUST00000223618 239 ntBASIC10.89□□□□□ -0.67
Hmgb3O54879 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Hmgb3O54879 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Mir497b-201ENSMUST00000093601 125 ntBASIC10.89□□□□□ -0.67
Hmgb3O54879 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Dlec1-208ENSMUST00000165231 5263 ntAPPRIS P2 TSL 5 BASIC10.89□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 106.3 ms