Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Gm38266-201ENSMUST00000194931 421 ntBASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Gm4935-201ENSMUST00000221316 1198 ntBASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Gm43423-201ENSMUST00000198390 2094 ntBASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Gm28182-201ENSMUST00000188354 2477 ntBASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Gm11793-201ENSMUST00000120433 981 ntBASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Gm18935-201ENSMUST00000212692 664 ntBASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Gm43579-201ENSMUST00000202387 1307 ntBASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim54Q9ERP3 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Matn2-206ENSMUST00000228570 2798 ntBASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim54Q9ERP3 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms