Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Mir7023-201ENSMUST00000185093 64 ntBASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Gm10766-202ENSMUST00000194123 606 ntBASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx28Q9CWT6 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Gm20949-201ENSMUST00000206478 952 ntBASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Gm5425-201ENSMUST00000214125 459 ntBASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Gm7775-201ENSMUST00000218871 853 ntBASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Gm9063-201ENSMUST00000223299 582 ntBASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx28Q9CWT6 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Gm14057-201ENSMUST00000120631 482 ntBASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Gm8337-201ENSMUST00000187358 1938 ntBASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx28Q9CWT6 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Ddx28Q9CWT6 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Ddx28Q9CWT6 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms