Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Gm14381-201ENSMUST00000122105 414 ntBASIC18.04■□□□□ 0.48
Usp40Q8BWR4 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC18.04■□□□□ 0.48
Usp40Q8BWR4 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 AC122371.3-201ENSMUST00000223402 1061 ntBASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp40Q8BWR4 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Mir877-201ENSMUST00000104738 85 ntBASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Gm27320-201ENSMUST00000184892 109 ntBASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp40Q8BWR4 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Gm12749-201ENSMUST00000122138 1159 ntBASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Ighv8-10-201ENSMUST00000199579 358 ntBASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC18.02■□□□□ 0.48
Usp40Q8BWR4 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Usp40Q8BWR4 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Usp40Q8BWR4 Gm28386-201ENSMUST00000189147 1849 ntBASIC18.02■□□□□ 0.47
Usp40Q8BWR4 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Usp40Q8BWR4 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Usp40Q8BWR4 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Usp40Q8BWR4 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Usp40Q8BWR4 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
Usp40Q8BWR4 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Gm8176-201ENSMUST00000191297 1099 ntBASIC18.01■□□□□ 0.47
Usp40Q8BWR4 AC159747.1-201ENSMUST00000219903 265 ntBASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Usp40Q8BWR4 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms