Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Trim28Q62318 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
Trim28Q62318 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC17.04■□□□□ 0.32
Trim28Q62318 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Gm44401-201ENSMUST00000204462 2375 ntBASIC17.03■□□□□ 0.32
Trim28Q62318 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Trim28Q62318 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC17.03■□□□□ 0.32
Trim28Q62318 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Trim28Q62318 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Gm10434-201ENSMUST00000101158 471 ntBASIC17.03■□□□□ 0.32
Trim28Q62318 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Gm11222-201ENSMUST00000119005 738 ntBASIC17.03■□□□□ 0.32
Trim28Q62318 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Trim28Q62318 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 AC122371.3-201ENSMUST00000223402 1061 ntBASIC17.03■□□□□ 0.32
Trim28Q62318 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC17.03■□□□□ 0.32
Trim28Q62318 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Trim28Q62318 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim28Q62318 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Trim28Q62318 Gm4366-201ENSMUST00000201488 1342 ntBASIC17.02■□□□□ 0.32
Trim28Q62318 Gm37827-201ENSMUST00000194486 1542 ntBASIC17.02■□□□□ 0.32
Trim28Q62318 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trim28Q62318 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trim28Q62318 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Trim28Q62318 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim28Q62318 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Trim28Q62318 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim28Q62318 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim28Q62318 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim28Q62318 Gm6652-201ENSMUST00000186414 1070 ntBASIC17.02■□□□□ 0.32
Trim28Q62318 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC17.02■□□□□ 0.32
Trim28Q62318 Gm4857-201ENSMUST00000192718 785 ntBASIC17.02■□□□□ 0.32
Trim28Q62318 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC17.02■□□□□ 0.32
Trim28Q62318 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
Trim28Q62318 Gm9004-201ENSMUST00000218739 1222 ntBASIC17.02■□□□□ 0.32
Trim28Q62318 CT009713.10-202ENSMUST00000225734 696 ntBASIC17.02■□□□□ 0.32
Trim28Q62318 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trim28Q62318 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim28Q62318 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim28Q62318 Gm6992-201ENSMUST00000217973 1607 ntBASIC17.02■□□□□ 0.31
Trim28Q62318 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim28Q62318 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Trim28Q62318 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim28Q62318 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim28Q62318 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Trim28Q62318 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim28Q62318 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Trim28Q62318 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Trim28Q62318 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim28Q62318 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Trim28Q62318 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Trim28Q62318 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Trim28Q62318 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
Trim28Q62318 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC17.01■□□□□ 0.31
Trim28Q62318 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 122.1 ms