Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Usf1Q61069 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Usf1Q61069 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Usf1Q61069 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC12.01□□□□□ -0.49
Usf1Q61069 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Fbxl12-205ENSMUST00000140702 1555 ntBASIC12.01□□□□□ -0.49
Usf1Q61069 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Usf1Q61069 Gm9856-201ENSMUST00000217077 2578 ntBASIC12.01□□□□□ -0.49
Usf1Q61069 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC12.01□□□□□ -0.49
Usf1Q61069 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC12.01□□□□□ -0.49
Usf1Q61069 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Usf1Q61069 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Usf1Q61069 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Gm34767-201ENSMUST00000191813 1062 ntBASIC12.01□□□□□ -0.49
Usf1Q61069 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC12.01□□□□□ -0.49
Usf1Q61069 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Usf1Q61069 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Usf1Q61069 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Usf1Q61069 Gm5846-201ENSMUST00000193146 1414 ntBASIC12.01□□□□□ -0.49
Usf1Q61069 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Gm43509-201ENSMUST00000196551 2594 ntBASIC12.01□□□□□ -0.49
Usf1Q61069 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Usf1Q61069 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Usf1Q61069 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC12.01□□□□□ -0.49
Usf1Q61069 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Usf1Q61069 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Usf1Q61069 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC12□□□□□ -0.49
Usf1Q61069 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
Usf1Q61069 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Usf1Q61069 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC12□□□□□ -0.49
Usf1Q61069 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Gm12217-201ENSMUST00000118858 696 ntBASIC12□□□□□ -0.49
Usf1Q61069 Gm13570-201ENSMUST00000140763 309 ntBASIC12□□□□□ -0.49
Usf1Q61069 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC12□□□□□ -0.49
Usf1Q61069 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC12□□□□□ -0.49
Usf1Q61069 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Mir6927-201ENSMUST00000184494 71 ntBASIC12□□□□□ -0.49
Usf1Q61069 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC12□□□□□ -0.49
Usf1Q61069 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC12□□□□□ -0.49
Usf1Q61069 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC12□□□□□ -0.49
Usf1Q61069 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC12□□□□□ -0.49
Usf1Q61069 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Usf1Q61069 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 78.4 ms