Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Gm14928-201ENSMUST00000120198 477 ntBASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 AC132467.2-202ENSMUST00000227726 559 ntBASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Gm15321-201ENSMUST00000121290 288 ntBASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Gm6218-201ENSMUST00000219812 628 ntBASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 AC155298.2-201ENSMUST00000225485 6226 ntBASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col28a1Q2UY11 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Gm12859-201ENSMUST00000117834 427 ntBASIC12.85□□□□□ -0.35
Col28a1Q2UY11 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC12.85□□□□□ -0.35
Col28a1Q2UY11 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 AL593843.1-201ENSMUST00000195891 145 ntBASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Gm18187-201ENSMUST00000196476 984 ntBASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col28a1Q2UY11 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms