Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cux1P53564 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cux1P53564 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Cux1P53564 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC19.99■□□□□ 0.79
Cux1P53564 Gm8494-201ENSMUST00000178171 1233 ntBASIC19.99■□□□□ 0.79
Cux1P53564 Gm8546-201ENSMUST00000178288 1264 ntBASIC19.99■□□□□ 0.79
Cux1P53564 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cux1P53564 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cux1P53564 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cux1P53564 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Cux1P53564 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Gm2420-202ENSMUST00000202224 2249 ntBASIC19.98■□□□□ 0.79
Cux1P53564 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC19.98■□□□□ 0.79
Cux1P53564 Gm12380-201ENSMUST00000119012 544 ntBASIC19.98■□□□□ 0.79
Cux1P53564 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Cux1P53564 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC19.98■□□□□ 0.79
Cux1P53564 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Cux1P53564 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC19.98■□□□□ 0.79
Cux1P53564 Gm19187-201ENSMUST00000206781 892 ntBASIC19.98■□□□□ 0.79
Cux1P53564 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Cux1P53564 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC19.98■□□□□ 0.79
Cux1P53564 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC19.98■□□□□ 0.79
Cux1P53564 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Cux1P53564 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC19.98■□□□□ 0.79
Cux1P53564 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cux1P53564 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cux1P53564 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cux1P53564 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cux1P53564 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC19.97■□□□□ 0.79
Cux1P53564 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC19.97■□□□□ 0.79
Cux1P53564 Gm12015-201ENSMUST00000117065 843 ntBASIC19.97■□□□□ 0.79
Cux1P53564 Gm13296-201ENSMUST00000117854 997 ntBASIC19.97■□□□□ 0.79
Cux1P53564 Gm20426-201ENSMUST00000173657 440 ntBASIC19.97■□□□□ 0.79
Cux1P53564 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Cux1P53564 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Cux1P53564 CT009718.3-201ENSMUST00000221116 367 ntBASIC19.97■□□□□ 0.79
Cux1P53564 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cux1P53564 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cux1P53564 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Cux1P53564 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cux1P53564 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cux1P53564 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cux1P53564 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC19.97■□□□□ 0.79
Cux1P53564 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Cux1P53564 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cux1P53564 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Cux1P53564 Gm11597-201ENSMUST00000121423 964 ntBASIC19.97■□□□□ 0.79
Cux1P53564 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC19.97■□□□□ 0.79
Cux1P53564 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Cux1P53564 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC19.97■□□□□ 0.79
Cux1P53564 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC19.96■□□□□ 0.79
Cux1P53564 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 AC122197.2-201ENSMUST00000219196 1635 ntBASIC19.96■□□□□ 0.79
Cux1P53564 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Cux1P53564 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Cux1P53564 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
Cux1P53564 Gm12314-201ENSMUST00000118104 538 ntBASIC19.96■□□□□ 0.79
Cux1P53564 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC19.96■□□□□ 0.79
Cux1P53564 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Cux1P53564 Gm44100-201ENSMUST00000204329 436 ntBASIC19.96■□□□□ 0.79
Cux1P53564 Gm44651-201ENSMUST00000207343 372 ntBASIC19.96■□□□□ 0.79
Cux1P53564 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Cux1P53564 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Cux1P53564 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cux1P53564 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cux1P53564 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC19.95■□□□□ 0.78
Cux1P53564 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cux1P53564 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cux1P53564 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms