Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Gm12390-201ENSMUST00000117897 397 ntBASIC10.39□□□□□ -0.75
Hoxd3P09027 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Gm11425-201ENSMUST00000119608 498 ntBASIC10.39□□□□□ -0.75
Hoxd3P09027 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Fam24a-202ENSMUST00000207439 711 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC10.39□□□□□ -0.75
Hoxd3P09027 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 AC116589.3-201ENSMUST00000223034 1165 ntTSL 5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Gm9396-201ENSMUST00000076703 567 ntBASIC10.39□□□□□ -0.75
Hoxd3P09027 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC10.39□□□□□ -0.75
Hoxd3P09027 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hoxd3P09027 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gm13505-201ENSMUST00000121666 817 ntBASIC10.38□□□□□ -0.75
Hoxd3P09027 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gm8835-201ENSMUST00000173096 1169 ntBASIC10.38□□□□□ -0.75
Hoxd3P09027 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gm9124-201ENSMUST00000191789 1092 ntBASIC10.38□□□□□ -0.75
Hoxd3P09027 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gm9113-201ENSMUST00000192510 1018 ntBASIC10.38□□□□□ -0.75
Hoxd3P09027 Gm9131-201ENSMUST00000193557 1089 ntBASIC10.38□□□□□ -0.75
Hoxd3P09027 Gm9121-201ENSMUST00000193749 1071 ntBASIC10.38□□□□□ -0.75
Hoxd3P09027 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC10.38□□□□□ -0.75
Hoxd3P09027 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gm40383-201ENSMUST00000222601 610 ntTSL 5 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Olfr1447-201ENSMUST00000071484 1113 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Olfr1446-201ENSMUST00000081236 1044 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms