Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC15.59■□□□□ 0.09
Col3a1P08121 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col3a1P08121 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC15.59■□□□□ 0.09
Col3a1P08121 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col3a1P08121 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col3a1P08121 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col3a1P08121 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col3a1P08121 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Col3a1P08121 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col3a1P08121 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col3a1P08121 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col3a1P08121 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col3a1P08121 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
Col3a1P08121 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col3a1P08121 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC15.58■□□□□ 0.09
Col3a1P08121 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col3a1P08121 Gm45546-201ENSMUST00000211053 2394 ntBASIC15.58■□□□□ 0.09
Col3a1P08121 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col3a1P08121 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col3a1P08121 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col3a1P08121 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC15.58■□□□□ 0.08
Col3a1P08121 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col3a1P08121 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col3a1P08121 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Col3a1P08121 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC15.58■□□□□ 0.08
Col3a1P08121 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC15.58■□□□□ 0.08
Col3a1P08121 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col3a1P08121 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC15.58■□□□□ 0.08
Col3a1P08121 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Col3a1P08121 Gm24830-201ENSMUST00000102024 166 ntBASIC15.58■□□□□ 0.08
Col3a1P08121 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col3a1P08121 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col3a1P08121 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC15.58■□□□□ 0.08
Col3a1P08121 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC15.58■□□□□ 0.08
Col3a1P08121 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Col3a1P08121 Gm25890-201ENSMUST00000177643 165 ntBASIC15.58■□□□□ 0.08
Col3a1P08121 Rnu1b2-201ENSMUST00000178073 165 ntBASIC15.58■□□□□ 0.08
Col3a1P08121 Rnu1b1-201ENSMUST00000178250 165 ntBASIC15.58■□□□□ 0.08
Col3a1P08121 Gm22614-201ENSMUST00000178300 165 ntBASIC15.58■□□□□ 0.08
Col3a1P08121 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Col3a1P08121 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC15.58■□□□□ 0.08
Col3a1P08121 Gm5363-201ENSMUST00000211927 938 ntBASIC15.58■□□□□ 0.08
Col3a1P08121 Gm22042-201ENSMUST00000082989 165 ntBASIC15.58■□□□□ 0.08
Col3a1P08121 Gm26232-201ENSMUST00000083360 166 ntBASIC15.58■□□□□ 0.08
Col3a1P08121 Gm24136-201ENSMUST00000083374 165 ntBASIC15.58■□□□□ 0.08
Col3a1P08121 Rnu1b6-201ENSMUST00000083839 166 ntBASIC15.58■□□□□ 0.08
Col3a1P08121 Gm26110-201ENSMUST00000083971 165 ntBASIC15.58■□□□□ 0.08
Col3a1P08121 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC15.58■□□□□ 0.08
Col3a1P08121 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col3a1P08121 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col3a1P08121 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC15.57■□□□□ 0.08
Col3a1P08121 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC15.57■□□□□ 0.08
Col3a1P08121 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Col3a1P08121 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC15.57■□□□□ 0.08
Col3a1P08121 AA914427-201ENSMUST00000193194 1166 ntBASIC15.57■□□□□ 0.08
Col3a1P08121 Gm19963-201ENSMUST00000208413 1255 ntBASIC15.57■□□□□ 0.08
Col3a1P08121 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC15.57■□□□□ 0.08
Col3a1P08121 AC155637.1-201ENSMUST00000218560 636 ntBASIC15.57■□□□□ 0.08
Col3a1P08121 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC15.57■□□□□ 0.08
Col3a1P08121 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Col3a1P08121 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC15.57■□□□□ 0.08
Col3a1P08121 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col3a1P08121 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Col3a1P08121 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Gm5939-201ENSMUST00000119613 2874 ntBASIC15.56■□□□□ 0.08
Col3a1P08121 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Col3a1P08121 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Col3a1P08121 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
Col3a1P08121 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Gm12058-201ENSMUST00000118614 437 ntBASIC15.56■□□□□ 0.08
Col3a1P08121 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC15.56■□□□□ 0.08
Col3a1P08121 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col3a1P08121 Mir5132-201ENSMUST00000175166 71 ntBASIC15.56■□□□□ 0.08
Col3a1P08121 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC15.56■□□□□ 0.08
Col3a1P08121 Gm5904-201ENSMUST00000210286 865 ntBASIC15.56■□□□□ 0.08
Col3a1P08121 AC165260.3-202ENSMUST00000224550 1031 ntBASIC15.56■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 69 ms