Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC10.93□□□□□ -0.66
Hmgb3O54879 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC10.93□□□□□ -0.66
Hmgb3O54879 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Zfp704-201ENSMUST00000041124 13834 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
Hmgb3O54879 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Gm42480-201ENSMUST00000198434 2595 ntBASIC10.93□□□□□ -0.66
Hmgb3O54879 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
Hmgb3O54879 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hmgb3O54879 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Greb1l-201ENSMUST00000048977 8414 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Hmgb3O54879 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC10.92□□□□□ -0.66
Hmgb3O54879 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Gm5385-201ENSMUST00000118988 1559 ntBASIC10.92□□□□□ -0.66
Hmgb3O54879 Gm45751-201ENSMUST00000210185 1573 ntBASIC10.92□□□□□ -0.66
Hmgb3O54879 Syt7-205ENSMUST00000224135 1557 ntBASIC10.92□□□□□ -0.66
Hmgb3O54879 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC10.92□□□□□ -0.66
Hmgb3O54879 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC10.92□□□□□ -0.66
Hmgb3O54879 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
Hmgb3O54879 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC10.92□□□□□ -0.66
Hmgb3O54879 Gm6226-201ENSMUST00000117765 1146 ntBASIC10.92□□□□□ -0.66
Hmgb3O54879 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC10.92□□□□□ -0.66
Hmgb3O54879 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC10.92□□□□□ -0.66
Hmgb3O54879 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Hmgb3O54879 Gm21362-201ENSMUST00000194272 928 ntBASIC10.92□□□□□ -0.66
Hmgb3O54879 Gm44492-201ENSMUST00000197012 141 ntBASIC10.92□□□□□ -0.66
Hmgb3O54879 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 AC149588.3-201ENSMUST00000227515 150 ntBASIC10.92□□□□□ -0.66
Hmgb3O54879 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC10.92□□□□□ -0.66
Hmgb3O54879 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC10.92□□□□□ -0.66
Hmgb3O54879 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Gm42863-201ENSMUST00000197875 2958 ntBASIC10.92□□□□□ -0.66
Hmgb3O54879 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Hmgb3O54879 Adcy8-202ENSMUST00000228014 6900 ntAPPRIS ALT2 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Hmgb3O54879 9330175E14Rik-201ENSMUST00000180445 4852 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Iqsec1-201ENSMUST00000101151 6490 ntTSL 5 BASIC10.91□□□□□ -0.66
Hmgb3O54879 AC122291.1-201ENSMUST00000228937 5748 ntBASIC10.91□□□□□ -0.66
Hmgb3O54879 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Fbxl18-202ENSMUST00000110766 7857 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Gm28659-201ENSMUST00000188013 759 ntBASIC10.91□□□□□ -0.66
Hmgb3O54879 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC10.91□□□□□ -0.66
Hmgb3O54879 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 AC149294.4-201ENSMUST00000227870 882 ntBASIC10.91□□□□□ -0.66
Hmgb3O54879 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hmgb3O54879 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 122.6 ms