Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.54□□□□□ -0.4
Use1Q9CQ56 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Gm4875-201ENSMUST00000118257 786 ntBASIC12.54□□□□□ -0.4
Use1Q9CQ56 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.54□□□□□ -0.4
Use1Q9CQ56 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Gm37171-201ENSMUST00000192636 1185 ntBASIC12.54□□□□□ -0.4
Use1Q9CQ56 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.54□□□□□ -0.4
Use1Q9CQ56 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC12.54□□□□□ -0.4
Use1Q9CQ56 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Use1Q9CQ56 AC117194.1-201ENSMUST00000224847 3002 ntBASIC12.54□□□□□ -0.4
Use1Q9CQ56 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Gm13886-201ENSMUST00000117876 1183 ntBASIC12.53□□□□□ -0.4
Use1Q9CQ56 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms