Protein–RNA interactions for Protein: Q920F6

Smc1b, Structural maintenance of chromosomes protein 1B, mousemouse

Predictions only

Length 1,248 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1bQ920F6 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smc1bQ920F6 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Gm1335-201ENSMUST00000121653 386 ntBASIC15.3■□□□□ 0.04
Smc1bQ920F6 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Gm6152-201ENSMUST00000151704 340 ntBASIC15.3■□□□□ 0.04
Smc1bQ920F6 Gm26083-201ENSMUST00000157904 193 ntBASIC15.3■□□□□ 0.04
Smc1bQ920F6 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC15.3■□□□□ 0.04
Smc1bQ920F6 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Smc1bQ920F6 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Proscos-202ENSMUST00000178990 666 ntBASIC15.3■□□□□ 0.04
Smc1bQ920F6 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC15.3■□□□□ 0.04
Smc1bQ920F6 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC15.3■□□□□ 0.04
Smc1bQ920F6 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC15.3■□□□□ 0.04
Smc1bQ920F6 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smc1bQ920F6 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Mir877-201ENSMUST00000104738 85 ntBASIC15.29■□□□□ 0.04
Smc1bQ920F6 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Ighv1-51-201ENSMUST00000192903 354 ntBASIC15.29■□□□□ 0.04
Smc1bQ920F6 Gm18753-201ENSMUST00000201000 566 ntBASIC15.29■□□□□ 0.04
Smc1bQ920F6 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC15.29■□□□□ 0.04
Smc1bQ920F6 AC140406.1-201ENSMUST00000226481 465 ntBASIC15.29■□□□□ 0.04
Smc1bQ920F6 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smc1bQ920F6 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Gm10156-201ENSMUST00000122364 462 ntBASIC15.28■□□□□ 0.04
Smc1bQ920F6 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Mir5132-201ENSMUST00000175166 71 ntBASIC15.28■□□□□ 0.04
Smc1bQ920F6 Gm27682-201ENSMUST00000183930 110 ntBASIC15.28■□□□□ 0.04
Smc1bQ920F6 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Gm3786-201ENSMUST00000202659 378 ntBASIC15.28■□□□□ 0.04
Smc1bQ920F6 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Smc1bQ920F6 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smc1bQ920F6 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms