Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Gm27494-201ENSMUST00000184735 189 ntBASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Gm38114-201ENSMUST00000191877 1232 ntBASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 AC122860.2-201ENSMUST00000217967 2671 ntBASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ccdc28bQ8CEG5 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 AC159195.1-201ENSMUST00000225867 2086 ntBASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Gm6283-201ENSMUST00000182369 1000 ntBASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Gm28323-201ENSMUST00000186817 2499 ntBASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Gm5989-201ENSMUST00000096092 2077 ntBASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ccdc28bQ8CEG5 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC13.08□□□□□ -0.31
Ccdc28bQ8CEG5 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Ccdc28bQ8CEG5 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Ccdc28bQ8CEG5 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Ccdc28bQ8CEG5 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
Ccdc28bQ8CEG5 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Gm24420-201ENSMUST00000176676 59 ntBASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Mir7221-201ENSMUST00000184009 72 ntBASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ccdc28bQ8CEG5 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms