Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 AC151895.1-201ENSMUST00000219025 1742 ntBASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col28a1Q2UY11 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC12.9□□□□□ -0.35
Col28a1Q2UY11 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC12.9□□□□□ -0.35
Col28a1Q2UY11 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Col28a1Q2UY11 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Gm45667-201ENSMUST00000210380 1316 ntBASIC12.89□□□□□ -0.35
Col28a1Q2UY11 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Gm12490-201ENSMUST00000120255 560 ntBASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 AC131997.1-201ENSMUST00000228611 1229 ntBASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Gm5989-201ENSMUST00000096092 2077 ntBASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
Col28a1Q2UY11 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Ighv1-25-201ENSMUST00000195638 345 ntBASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Gm38385-201ENSMUST00000194454 2351 ntBASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col28a1Q2UY11 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Gm20554-201ENSMUST00000177421 2352 ntBASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col28a1Q2UY11 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms