Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC19.86■□□□□ 0.77
Col17a1Q07563 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col17a1Q07563 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col17a1Q07563 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC19.86■□□□□ 0.77
Col17a1Q07563 Gm8756-201ENSMUST00000183250 929 ntBASIC19.86■□□□□ 0.77
Col17a1Q07563 Mir6407-201ENSMUST00000184510 101 ntBASIC19.86■□□□□ 0.77
Col17a1Q07563 Abracl-203ENSMUST00000218994 425 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Col17a1Q07563 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC19.85■□□□□ 0.77
Col17a1Q07563 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Col17a1Q07563 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Nupl1-207ENSMUST00000225311 2475 ntBASIC19.85■□□□□ 0.77
Col17a1Q07563 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Col17a1Q07563 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Gm11942-201ENSMUST00000180255 345 ntBASIC19.85■□□□□ 0.77
Col17a1Q07563 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 CT009536.2-201ENSMUST00000225370 665 ntBASIC19.85■□□□□ 0.77
Col17a1Q07563 AC136376.2-201ENSMUST00000228819 490 ntBASIC19.85■□□□□ 0.77
Col17a1Q07563 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Col17a1Q07563 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC19.85■□□□□ 0.77
Col17a1Q07563 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Lonp2-207ENSMUST00000163987 1556 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col17a1Q07563 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
Col17a1Q07563 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Col17a1Q07563 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Gm22594-201ENSMUST00000104251 130 ntBASIC19.84■□□□□ 0.77
Col17a1Q07563 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Col17a1Q07563 Gm14717-201ENSMUST00000140450 649 ntTSL 3 BASIC19.84■□□□□ 0.77
Col17a1Q07563 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Col17a1Q07563 Gm3238-201ENSMUST00000168298 693 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Col17a1Q07563 Gm9625-201ENSMUST00000180422 955 ntBASIC19.84■□□□□ 0.77
Col17a1Q07563 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC19.84■□□□□ 0.77
Col17a1Q07563 Gm45410-201ENSMUST00000211331 1093 ntBASIC19.84■□□□□ 0.77
Col17a1Q07563 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col17a1Q07563 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col17a1Q07563 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Col17a1Q07563 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Col17a1Q07563 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Col17a1Q07563 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Col17a1Q07563 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Col17a1Q07563 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Col17a1Q07563 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Col17a1Q07563 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC19.83■□□□□ 0.76
Col17a1Q07563 Gm7211-201ENSMUST00000172692 1118 ntBASIC19.83■□□□□ 0.76
Col17a1Q07563 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Col17a1Q07563 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col17a1Q07563 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC19.83■□□□□ 0.76
Col17a1Q07563 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC19.83■□□□□ 0.76
Col17a1Q07563 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC19.83■□□□□ 0.76
Col17a1Q07563 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC19.83■□□□□ 0.76
Col17a1Q07563 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col17a1Q07563 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col17a1Q07563 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col17a1Q07563 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col17a1Q07563 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col17a1Q07563 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col17a1Q07563 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC19.82■□□□□ 0.76
Col17a1Q07563 Slc1a3-208ENSMUST00000157065 728 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col17a1Q07563 Gm8494-201ENSMUST00000178171 1233 ntBASIC19.82■□□□□ 0.76
Col17a1Q07563 Gm9061-201ENSMUST00000182707 1006 ntBASIC19.82■□□□□ 0.76
Col17a1Q07563 Gm29304-201ENSMUST00000186555 695 ntBASIC19.82■□□□□ 0.76
Col17a1Q07563 Gm29223-201ENSMUST00000188867 695 ntBASIC19.82■□□□□ 0.76
Col17a1Q07563 Gm37921-201ENSMUST00000194333 695 ntBASIC19.82■□□□□ 0.76
Col17a1Q07563 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC19.82■□□□□ 0.76
Col17a1Q07563 AC154257.1-202ENSMUST00000224729 843 ntBASIC19.82■□□□□ 0.76
Col17a1Q07563 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col17a1Q07563 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
Col17a1Q07563 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col17a1Q07563 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.82■□□□□ 0.76
Col17a1Q07563 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col17a1Q07563 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms