Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col9a1Q05722 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col9a1Q05722 Gm15680-201ENSMUST00000161597 465 ntTSL 5 BASIC13.09□□□□□ -0.31
Col9a1Q05722 Gm20854-202ENSMUST00000181549 1156 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Col9a1Q05722 Gm20812-202ENSMUST00000189550 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col9a1Q05722 Gm42464-201ENSMUST00000196717 417 ntBASIC13.09□□□□□ -0.31
Col9a1Q05722 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC13.09□□□□□ -0.31
Col9a1Q05722 Gm45224-201ENSMUST00000208203 414 ntBASIC13.09□□□□□ -0.31
Col9a1Q05722 Gm18204-201ENSMUST00000209835 793 ntBASIC13.09□□□□□ -0.31
Col9a1Q05722 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC13.09□□□□□ -0.31
Col9a1Q05722 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC13.09□□□□□ -0.31
Col9a1Q05722 Ermard-209ENSMUST00000226561 1019 ntBASIC13.09□□□□□ -0.31
Col9a1Q05722 Obp1b-201ENSMUST00000088198 797 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col9a1Q05722 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col9a1Q05722 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col9a1Q05722 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col9a1Q05722 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col9a1Q05722 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Col9a1Q05722 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col9a1Q05722 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col9a1Q05722 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Col9a1Q05722 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col9a1Q05722 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col9a1Q05722 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col9a1Q05722 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col9a1Q05722 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col9a1Q05722 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Mir466f-2-201ENSMUST00000104805 94 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 Gm11450-201ENSMUST00000121144 333 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 Gm14718-201ENSMUST00000138082 752 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Gm15445-201ENSMUST00000146700 603 ntTSL 5 BASIC13.08□□□□□ -0.32
Col9a1Q05722 Btf3-205ENSMUST00000152704 888 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Col9a1Q05722 Gm2546-201ENSMUST00000182630 991 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC13.08□□□□□ -0.32
Col9a1Q05722 9430037O13Rik-201ENSMUST00000192556 1008 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 Gm18717-201ENSMUST00000192744 1241 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 Olfr241-ps1-201ENSMUST00000197024 633 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC13.08□□□□□ -0.32
Col9a1Q05722 Gm20177-201ENSMUST00000203705 334 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 Gm34701-201ENSMUST00000204213 849 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Cdkn3-201ENSMUST00000067426 917 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Olfr955-201ENSMUST00000073946 945 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Col9a1Q05722 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC13.08□□□□□ -0.32
Col9a1Q05722 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Col9a1Q05722 Carlr-201ENSMUST00000181515 2574 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC13.08□□□□□ -0.32
Col9a1Q05722 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col9a1Q05722 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Gm7278-201ENSMUST00000119836 1401 ntBASIC13.07□□□□□ -0.32
Col9a1Q05722 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Gm25295-201ENSMUST00000122794 306 ntBASIC13.07□□□□□ -0.32
Col9a1Q05722 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Gm16285-201ENSMUST00000162999 347 ntBASIC13.07□□□□□ -0.32
Col9a1Q05722 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Col9a1Q05722 B230112G18Rik-201ENSMUST00000192979 851 ntBASIC13.07□□□□□ -0.32
Col9a1Q05722 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Vmn1r-ps7-201ENSMUST00000202355 928 ntBASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms