Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC14.34□□□□□ -0.11
RaraP11416 CT573086.1-201ENSMUST00000227202 1074 ntBASIC14.34□□□□□ -0.11
RaraP11416 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
RaraP11416 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Gm28323-201ENSMUST00000186817 2499 ntBASIC14.34□□□□□ -0.11
RaraP11416 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Gm21038-201ENSMUST00000222205 1383 ntBASIC14.34□□□□□ -0.11
RaraP11416 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.11
RaraP11416 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RaraP11416 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RaraP11416 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RaraP11416 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RaraP11416 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RaraP11416 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
RaraP11416 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
RaraP11416 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
RaraP11416 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RaraP11416 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
RaraP11416 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
RaraP11416 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 AC117194.1-201ENSMUST00000224847 3002 ntBASIC14.33□□□□□ -0.12
RaraP11416 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC14.33□□□□□ -0.12
RaraP11416 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
RaraP11416 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC14.33□□□□□ -0.12
RaraP11416 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC14.33□□□□□ -0.12
RaraP11416 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
RaraP11416 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
RaraP11416 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
RaraP11416 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RaraP11416 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
RaraP11416 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC14.32□□□□□ -0.12
RaraP11416 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
RaraP11416 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC14.32□□□□□ -0.12
RaraP11416 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
RaraP11416 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC14.32□□□□□ -0.12
RaraP11416 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RaraP11416 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
RaraP11416 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC14.31□□□□□ -0.12
RaraP11416 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Gm15321-201ENSMUST00000121290 288 ntBASIC14.31□□□□□ -0.12
RaraP11416 Gm14719-201ENSMUST00000121891 340 ntBASIC14.31□□□□□ -0.12
RaraP11416 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC14.31□□□□□ -0.12
RaraP11416 AC073947.2-201ENSMUST00000215888 1130 ntBASIC14.31□□□□□ -0.12
RaraP11416 AC132863.2-201ENSMUST00000226643 799 ntBASIC14.31□□□□□ -0.12
RaraP11416 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms