Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lmx1bO88609 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lmx1bO88609 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lmx1bO88609 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Gm8062-201ENSMUST00000139696 444 ntBASIC12.02□□□□□ -0.49
Lmx1bO88609 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.02□□□□□ -0.49
Lmx1bO88609 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Gm45841-201ENSMUST00000207700 164 ntBASIC12.02□□□□□ -0.49
Lmx1bO88609 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
Lmx1bO88609 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC12.02□□□□□ -0.49
Lmx1bO88609 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC12.02□□□□□ -0.49
Lmx1bO88609 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lmx1bO88609 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Gm37844-201ENSMUST00000192473 4097 ntBASIC12.01□□□□□ -0.49
Lmx1bO88609 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Gm38144-201ENSMUST00000192790 465 ntBASIC12.01□□□□□ -0.49
Lmx1bO88609 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Gm6007-201ENSMUST00000208170 823 ntBASIC12.01□□□□□ -0.49
Lmx1bO88609 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Lmx1bO88609 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
Lmx1bO88609 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lmx1bO88609 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Lmx1bO88609 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lmx1bO88609 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lmx1bO88609 Gm10040-201ENSMUST00000080726 1662 ntBASIC12□□□□□ -0.49
Lmx1bO88609 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lmx1bO88609 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Lmx1bO88609 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lmx1bO88609 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Lmx1bO88609 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lmx1bO88609 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Lmx1bO88609 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC12□□□□□ -0.49
Lmx1bO88609 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms