Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Gm26185-201ENSMUST00000157692 266 ntBASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Gm45242-201ENSMUST00000210666 2129 ntBASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Ube3bQ9ES34 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Gm25261-201ENSMUST00000157416 134 ntBASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Gm17420-201ENSMUST00000164753 153 ntBASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Gm4768-201ENSMUST00000206199 686 ntBASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Gm19309-201ENSMUST00000218295 205 ntBASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Gm19163-201ENSMUST00000223313 780 ntBASIC15.73■□□□□ 0.11
Ube3bQ9ES34 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Gm10478-201ENSMUST00000084451 396 ntBASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ube3bQ9ES34 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Gm9924-202ENSMUST00000192760 2311 ntBASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Gm12363-201ENSMUST00000122250 668 ntBASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Gm25927-201ENSMUST00000175058 117 ntBASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Gm37042-201ENSMUST00000193816 581 ntBASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Gm44044-201ENSMUST00000205178 1089 ntBASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ube3bQ9ES34 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 70.7 ms