Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Gm16202-201ENSMUST00000117532 544 ntBASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Gm25927-201ENSMUST00000175058 117 ntBASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Gm43118-201ENSMUST00000199149 775 ntBASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Gm7172-201ENSMUST00000218047 1152 ntBASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC14.37□□□□□ -0.11
Trim54Q9ERP3 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Trim54Q9ERP3 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Gm19863-201ENSMUST00000192480 2218 ntBASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Gm5850-201ENSMUST00000192923 1206 ntBASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 70 ms