Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Gm28323-201ENSMUST00000186817 2499 ntBASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Gm15678-201ENSMUST00000117573 960 ntBASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Gm21470-201ENSMUST00000187680 696 ntBASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Gm43703-201ENSMUST00000200523 763 ntBASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lima1Q9ERG0 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Mir698-201ENSMUST00000102164 109 ntBASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Gm3436-201ENSMUST00000179930 840 ntBASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Gm18934-201ENSMUST00000216671 1044 ntBASIC13.11□□□□□ -0.31
Lima1Q9ERG0 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lima1Q9ERG0 Gm45643-201ENSMUST00000211364 1484 ntBASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Ighv1-51-201ENSMUST00000192903 354 ntBASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Gm4971-201ENSMUST00000205991 1108 ntBASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Gm7775-201ENSMUST00000218871 853 ntBASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 AC126408.1-201ENSMUST00000225184 523 ntBASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Gm42863-201ENSMUST00000197875 2958 ntBASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lima1Q9ERG0 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms