Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Gm8531-201ENSMUST00000188319 893 ntBASIC17.6■□□□□ 0.41
Scn4aQ9ER60 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Gm18499-201ENSMUST00000220808 1021 ntBASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Gm18968-201ENSMUST00000221319 862 ntBASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Scn4aQ9ER60 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Ntm-202ENSMUST00000115236 1072 ntTSL 5 BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Gm11949-201ENSMUST00000117640 372 ntBASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Gm13008-201ENSMUST00000142289 507 ntTSL 5 BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Gm5466-201ENSMUST00000119395 1890 ntBASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Scn4aQ9ER60 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Scn4aQ9ER60 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Scn4aQ9ER60 Gm12579-201ENSMUST00000118040 783 ntBASIC17.58■□□□□ 0.41
Scn4aQ9ER60 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC17.58■□□□□ 0.41
Scn4aQ9ER60 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC17.58■□□□□ 0.41
Scn4aQ9ER60 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
Scn4aQ9ER60 CT485606.1-201ENSMUST00000213187 878 ntBASIC17.58■□□□□ 0.41
Scn4aQ9ER60 AC151275.1-201ENSMUST00000224870 585 ntBASIC17.58■□□□□ 0.41
Scn4aQ9ER60 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
Scn4aQ9ER60 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Scn4aQ9ER60 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Scn4aQ9ER60 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Scn4aQ9ER60 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC17.58■□□□□ 0.41
Scn4aQ9ER60 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Scn4aQ9ER60 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC17.58■□□□□ 0.41
Scn4aQ9ER60 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Gm15352-201ENSMUST00000118696 270 ntBASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Gm14034-201ENSMUST00000120147 551 ntBASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Gm44507-201ENSMUST00000206249 343 ntTSL 5 BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Acot13-201ENSMUST00000006900 721 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Gm15889-202ENSMUST00000212669 2443 ntBASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Gm6170-201ENSMUST00000187672 1388 ntBASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.58■□□□□ 0.4
Scn4aQ9ER60 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Gm9856-201ENSMUST00000217077 2578 ntBASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Gm5909-201ENSMUST00000119768 1281 ntBASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Gm9166-201ENSMUST00000120293 561 ntBASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Ighv4-2-201ENSMUST00000192975 362 ntBASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Gm42433-201ENSMUST00000196806 940 ntBASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Gm9645-201ENSMUST00000197131 792 ntBASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Gm28719-201ENSMUST00000187779 1757 ntBASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Gm5641-201ENSMUST00000091130 1488 ntBASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Scn4aQ9ER60 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms