Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdc40Q9DC48 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Gm43570-201ENSMUST00000199951 3688 ntBASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Gm27486-201ENSMUST00000184923 80 ntBASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Gm7067-201ENSMUST00000207698 1249 ntBASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 AC139350.1-201ENSMUST00000227064 1594 ntBASIC12.34□□□□□ -0.43
Cdc40Q9DC48 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Cdc40Q9DC48 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Cdc40Q9DC48 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Cdc40Q9DC48 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.33□□□□□ -0.44
Cdc40Q9DC48 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 AC125117.1-201ENSMUST00000228121 468 ntBASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdc40Q9DC48 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms