Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Use1Q9CQ56 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Gm38355-201ENSMUST00000192514 1570 ntBASIC12.56□□□□□ -0.4
Use1Q9CQ56 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Gm43273-201ENSMUST00000199649 2594 ntBASIC12.56□□□□□ -0.4
Use1Q9CQ56 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 AC122314.1-201ENSMUST00000223056 2239 ntBASIC12.56□□□□□ -0.4
Use1Q9CQ56 Gm23935-201ENSMUST00000102303 57 ntBASIC12.56□□□□□ -0.4
Use1Q9CQ56 Gm24270-201ENSMUST00000102326 57 ntBASIC12.56□□□□□ -0.4
Use1Q9CQ56 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.56□□□□□ -0.4
Use1Q9CQ56 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Gm24245-201ENSMUST00000157318 57 ntBASIC12.56□□□□□ -0.4
Use1Q9CQ56 Gm37935-201ENSMUST00000192012 982 ntBASIC12.56□□□□□ -0.4
Use1Q9CQ56 Gm43575-201ENSMUST00000196420 516 ntBASIC12.56□□□□□ -0.4
Use1Q9CQ56 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Use1Q9CQ56 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Gm45706-201ENSMUST00000213063 2136 ntBASIC12.56□□□□□ -0.4
Use1Q9CQ56 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC12.56□□□□□ -0.4
Use1Q9CQ56 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.56□□□□□ -0.4
Use1Q9CQ56 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Use1Q9CQ56 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.55□□□□□ -0.4
Use1Q9CQ56 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.55□□□□□ -0.4
Use1Q9CQ56 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Gm17795-201ENSMUST00000214505 757 ntBASIC12.55□□□□□ -0.4
Use1Q9CQ56 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Gm17330-201ENSMUST00000221047 165 ntBASIC12.55□□□□□ -0.4
Use1Q9CQ56 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC12.55□□□□□ -0.4
Use1Q9CQ56 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Use1Q9CQ56 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms