Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Lsm1Q8VC85 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lsm1Q8VC85 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lsm1Q8VC85 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Gm19078-201ENSMUST00000206311 727 ntBASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lsm1Q8VC85 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Gm45643-201ENSMUST00000211364 1484 ntBASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Gm11524-201ENSMUST00000119349 807 ntBASIC12.74□□□□□ -0.37
Lsm1Q8VC85 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Mir6956-201ENSMUST00000183598 62 ntBASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Gm27838-201ENSMUST00000184829 128 ntBASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Gm29608-201ENSMUST00000190444 463 ntBASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Gm9797-201ENSMUST00000052902 613 ntBASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Lsm1Q8VC85 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Gm6161-201ENSMUST00000121942 1102 ntBASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Gm6254-201ENSMUST00000168178 1072 ntBASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Gm6153-201ENSMUST00000172004 1058 ntBASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Gm5641-202ENSMUST00000198699 1080 ntBASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 CT573086.1-201ENSMUST00000227202 1074 ntBASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lsm1Q8VC85 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 65.3 ms