Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC18.65■□□□□ 0.58
Usp47Q8BY87 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Usp47Q8BY87 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp47Q8BY87 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Usp47Q8BY87 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Usp47Q8BY87 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Usp47Q8BY87 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Usp47Q8BY87 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Usp47Q8BY87 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Usp47Q8BY87 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Usp47Q8BY87 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp47Q8BY87 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC18.64■□□□□ 0.57
Usp47Q8BY87 Mir874-201ENSMUST00000104769 76 ntBASIC18.64■□□□□ 0.57
Usp47Q8BY87 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Gm11793-201ENSMUST00000120433 981 ntBASIC18.64■□□□□ 0.57
Usp47Q8BY87 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp47Q8BY87 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Gm44772-201ENSMUST00000207623 1191 ntBASIC18.64■□□□□ 0.57
Usp47Q8BY87 Gm45880-201ENSMUST00000213041 853 ntBASIC18.64■□□□□ 0.57
Usp47Q8BY87 n-R5s77-201ENSMUST00000083757 119 ntBASIC18.64■□□□□ 0.57
Usp47Q8BY87 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp47Q8BY87 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp47Q8BY87 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC18.63■□□□□ 0.57
Usp47Q8BY87 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Gm44401-201ENSMUST00000204462 2375 ntBASIC18.63■□□□□ 0.57
Usp47Q8BY87 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Grk6-205ENSMUST00000224653 2976 ntBASIC18.63■□□□□ 0.57
Usp47Q8BY87 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Gm17208-201ENSMUST00000168388 535 ntBASIC18.63■□□□□ 0.57
Usp47Q8BY87 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC18.63■□□□□ 0.57
Usp47Q8BY87 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC18.63■□□□□ 0.57
Usp47Q8BY87 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 AC154462.2-201ENSMUST00000227519 370 ntBASIC18.63■□□□□ 0.57
Usp47Q8BY87 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Gm38157-201ENSMUST00000194178 1698 ntBASIC18.63■□□□□ 0.57
Usp47Q8BY87 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Usp47Q8BY87 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp47Q8BY87 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 AC153366.2-201ENSMUST00000219461 1984 ntBASIC18.62■□□□□ 0.57
Usp47Q8BY87 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Gm43579-201ENSMUST00000202387 1307 ntBASIC18.62■□□□□ 0.57
Usp47Q8BY87 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 AC140406.1-201ENSMUST00000226481 465 ntBASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms