Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Gm4959-201ENSMUST00000197271 1044 ntBASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
Usp40Q8BWR4 Gm43134-201ENSMUST00000199434 1886 ntBASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Gm44772-201ENSMUST00000207623 1191 ntBASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Gm18056-201ENSMUST00000207670 568 ntBASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Gm18061-201ENSMUST00000208350 562 ntBASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Gm18063-201ENSMUST00000208529 568 ntBASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Gm18052-201ENSMUST00000208750 559 ntBASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp40Q8BWR4 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp40Q8BWR4 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Usp40Q8BWR4 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Usp40Q8BWR4 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Usp40Q8BWR4 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp40Q8BWR4 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp40Q8BWR4 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Usp40Q8BWR4 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Usp40Q8BWR4 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp40Q8BWR4 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp40Q8BWR4 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Gm14704-201ENSMUST00000120300 874 ntBASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Gm26083-201ENSMUST00000157904 193 ntBASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Ighv1-62-201ENSMUST00000193406 350 ntBASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Gm21769-201ENSMUST00000211922 111 ntBASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp40Q8BWR4 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp40Q8BWR4 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms