Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Gm37736-201ENSMUST00000193564 2802 ntBASIC14.54□□□□□ -0.08
Col11a1Q61245 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC14.54□□□□□ -0.08
Col11a1Q61245 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Col11a1Q61245 Gm15711-201ENSMUST00000118889 535 ntBASIC14.54□□□□□ -0.08
Col11a1Q61245 Gm12029-201ENSMUST00000120073 832 ntBASIC14.54□□□□□ -0.08
Col11a1Q61245 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC14.54□□□□□ -0.08
Col11a1Q61245 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Col11a1Q61245 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Col11a1Q61245 Gm38210-201ENSMUST00000191944 809 ntBASIC14.54□□□□□ -0.08
Col11a1Q61245 Gm37905-201ENSMUST00000195310 341 ntBASIC14.54□□□□□ -0.08
Col11a1Q61245 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col11a1Q61245 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Col11a1Q61245 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Gm12196-201ENSMUST00000120954 262 ntBASIC14.53□□□□□ -0.08
Col11a1Q61245 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC14.53□□□□□ -0.08
Col11a1Q61245 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC14.53□□□□□ -0.08
Col11a1Q61245 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Mir7686-201ENSMUST00000200604 57 ntBASIC14.53□□□□□ -0.08
Col11a1Q61245 Gm19287-201ENSMUST00000203190 358 ntBASIC14.53□□□□□ -0.08
Col11a1Q61245 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Col11a1Q61245 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC14.53□□□□□ -0.08
Col11a1Q61245 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC14.53□□□□□ -0.08
Col11a1Q61245 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col11a1Q61245 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col11a1Q61245 Gm44094-201ENSMUST00000204703 2030 ntBASIC14.52□□□□□ -0.08
Col11a1Q61245 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Col11a1Q61245 Gm13035-201ENSMUST00000117496 342 ntBASIC14.52□□□□□ -0.08
Col11a1Q61245 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Col11a1Q61245 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC14.52□□□□□ -0.08
Col11a1Q61245 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC14.52□□□□□ -0.08
Col11a1Q61245 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col11a1Q61245 AY036118-201ENSMUST00000200021 923 ntBASIC14.52□□□□□ -0.08
Col11a1Q61245 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col11a1Q61245 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col11a1Q61245 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col11a1Q61245 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Col11a1Q61245 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col11a1Q61245 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col11a1Q61245 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col11a1Q61245 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col11a1Q61245 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
Col11a1Q61245 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col11a1Q61245 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Col11a1Q61245 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Col11a1Q61245 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
Col11a1Q61245 Gm5778-201ENSMUST00000171003 1072 ntBASIC14.52□□□□□ -0.09
Col11a1Q61245 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col11a1Q61245 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Col11a1Q61245 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col11a1Q61245 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
Col11a1Q61245 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col11a1Q61245 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Col11a1Q61245 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
Col11a1Q61245 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col11a1Q61245 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col11a1Q61245 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col11a1Q61245 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col11a1Q61245 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col11a1Q61245 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col11a1Q61245 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Col11a1Q61245 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col11a1Q61245 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col11a1Q61245 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col11a1Q61245 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Col11a1Q61245 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col11a1Q61245 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col11a1Q61245 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 122.4 ms