Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC14.53□□□□□ -0.08
Lig3P97386 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC14.53□□□□□ -0.08
Lig3P97386 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
Lig3P97386 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC14.53□□□□□ -0.08
Lig3P97386 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Gm12928-201ENSMUST00000117115 573 ntBASIC14.53□□□□□ -0.08
Lig3P97386 Gm27243-201ENSMUST00000183964 521 ntBASIC14.53□□□□□ -0.08
Lig3P97386 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC14.53□□□□□ -0.08
Lig3P97386 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Lig3P97386 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC14.53□□□□□ -0.08
Lig3P97386 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lig3P97386 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Lig3P97386 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lig3P97386 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.08
Lig3P97386 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.08
Lig3P97386 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Lig3P97386 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lig3P97386 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Lig3P97386 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lig3P97386 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lig3P97386 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
Lig3P97386 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lig3P97386 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lig3P97386 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lig3P97386 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lig3P97386 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC14.52□□□□□ -0.09
Lig3P97386 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Lig3P97386 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Gm8584-201ENSMUST00000171982 758 ntBASIC14.52□□□□□ -0.09
Lig3P97386 Gm8565-201ENSMUST00000183259 1014 ntBASIC14.52□□□□□ -0.09
Lig3P97386 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Lig3P97386 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Lig3P97386 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lig3P97386 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Lig3P97386 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
Lig3P97386 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC14.51□□□□□ -0.09
Lig3P97386 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Lig3P97386 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Lig3P97386 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
Lig3P97386 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Gm23931-201ENSMUST00000103842 109 ntBASIC14.51□□□□□ -0.09
Lig3P97386 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Gm14723-201ENSMUST00000118686 215 ntBASIC14.51□□□□□ -0.09
Lig3P97386 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC14.51□□□□□ -0.09
Lig3P97386 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC14.51□□□□□ -0.09
Lig3P97386 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC14.51□□□□□ -0.09
Lig3P97386 Gm38241-201ENSMUST00000192641 898 ntBASIC14.51□□□□□ -0.09
Lig3P97386 Gm42442-201ENSMUST00000197951 1133 ntBASIC14.51□□□□□ -0.09
Lig3P97386 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC14.51□□□□□ -0.09
Lig3P97386 Gm7619-201ENSMUST00000210649 1282 ntBASIC14.51□□□□□ -0.09
Lig3P97386 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 AC154276.1-201ENSMUST00000228874 1299 ntBASIC14.51□□□□□ -0.09
Lig3P97386 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lig3P97386 Dctn4-202ENSMUST00000223590 1530 ntBASIC14.51□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms