Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.13□□□□□ -0.47
Cdh11P55288 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Cdh11P55288 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Gm45667-201ENSMUST00000210380 1316 ntBASIC12.12□□□□□ -0.47
Cdh11P55288 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC12.12□□□□□ -0.47
Cdh11P55288 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC12.12□□□□□ -0.47
Cdh11P55288 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Cdh11P55288 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Cdh11P55288 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
Cdh11P55288 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Gm15460-201ENSMUST00000118147 391 ntBASIC12.12□□□□□ -0.47
Cdh11P55288 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC12.12□□□□□ -0.47
Cdh11P55288 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC12.12□□□□□ -0.47
Cdh11P55288 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC12.12□□□□□ -0.47
Cdh11P55288 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
Cdh11P55288 Gm45195-201ENSMUST00000205597 1008 ntBASIC12.12□□□□□ -0.47
Cdh11P55288 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
Cdh11P55288 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Cdh11P55288 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Cdh11P55288 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Cdh11P55288 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Cdh11P55288 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Cdh11P55288 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.12□□□□□ -0.47
Cdh11P55288 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdh11P55288 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC12.11□□□□□ -0.47
Cdh11P55288 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Cdh11P55288 Gm8337-201ENSMUST00000187358 1938 ntBASIC12.11□□□□□ -0.47
Cdh11P55288 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Cdh11P55288 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Cdh11P55288 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Cdh11P55288 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Cdh11P55288 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC12.11□□□□□ -0.47
Cdh11P55288 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
Cdh11P55288 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC12.11□□□□□ -0.47
Cdh11P55288 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 AC154846.1-201ENSMUST00000226278 862 ntBASIC12.11□□□□□ -0.47
Cdh11P55288 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC12.11□□□□□ -0.47
Cdh11P55288 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC12.11□□□□□ -0.47
Cdh11P55288 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Cdh11P55288 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdh11P55288 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
Cdh11P55288 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Cdh11P55288 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdh11P55288 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms