Protein–RNA interactions for Protein: P20040

H-2 class II histocompatibility antigen, E-Q beta chain, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P20040 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
P20040 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
P20040 Gm21854-201ENSMUST00000179901 471 ntBASIC11.82□□□□□ -0.52
P20040 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC11.82□□□□□ -0.52
P20040 Gm45195-201ENSMUST00000205597 1008 ntBASIC11.82□□□□□ -0.52
P20040 Gm9797-201ENSMUST00000052902 613 ntBASIC11.82□□□□□ -0.52
P20040 Gm27196-201ENSMUST00000184787 2582 ntBASIC11.82□□□□□ -0.52
P20040 Gm42480-201ENSMUST00000198434 2595 ntBASIC11.82□□□□□ -0.52
P20040 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
P20040 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
P20040 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
P20040 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
P20040 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC11.81□□□□□ -0.52
P20040 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
P20040 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC11.81□□□□□ -0.52
P20040 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC11.81□□□□□ -0.52
P20040 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
P20040 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
P20040 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC11.81□□□□□ -0.52
P20040 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
P20040 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC11.81□□□□□ -0.52
P20040 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC11.81□□□□□ -0.52
P20040 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC11.81□□□□□ -0.52
P20040 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 AC135669.1-201ENSMUST00000213585 412 ntBASIC11.81□□□□□ -0.52
P20040 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Gm43423-201ENSMUST00000198390 2094 ntBASIC11.81□□□□□ -0.52
P20040 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC11.81□□□□□ -0.52
P20040 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
P20040 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
P20040 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC11.81□□□□□ -0.52
P20040 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC11.81□□□□□ -0.52
P20040 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
P20040 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC11.8□□□□□ -0.52
P20040 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC11.8□□□□□ -0.52
P20040 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
P20040 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
P20040 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
P20040 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
P20040 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
P20040 AC114543.1-201ENSMUST00000226451 1558 ntBASIC11.8□□□□□ -0.52
P20040 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
P20040 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
P20040 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
P20040 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC11.8□□□□□ -0.52
P20040 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
P20040 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
P20040 Gm22189-201ENSMUST00000103822 86 ntBASIC11.8□□□□□ -0.52
P20040 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
P20040 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
P20040 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC11.8□□□□□ -0.52
P20040 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC11.8□□□□□ -0.52
P20040 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC11.8□□□□□ -0.52
P20040 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
P20040 Gm28760-201ENSMUST00000185995 736 ntBASIC11.8□□□□□ -0.52
P20040 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
P20040 Gm44719-201ENSMUST00000206404 149 ntBASIC11.8□□□□□ -0.52
P20040 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
P20040 Gm6218-201ENSMUST00000219812 628 ntBASIC11.8□□□□□ -0.52
P20040 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
P20040 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
P20040 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms