Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Gm27194-201ENSMUST00000175753 2936 ntBASIC14.37□□□□□ -0.11
RaraP11416 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
RaraP11416 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
RaraP11416 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
RaraP11416 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
RaraP11416 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
RaraP11416 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
RaraP11416 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RaraP11416 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC14.36□□□□□ -0.11
RaraP11416 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
RaraP11416 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC14.36□□□□□ -0.11
RaraP11416 Gm19078-201ENSMUST00000206311 727 ntBASIC14.36□□□□□ -0.11
RaraP11416 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC14.36□□□□□ -0.11
RaraP11416 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Gm9797-201ENSMUST00000052902 613 ntBASIC14.36□□□□□ -0.11
RaraP11416 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Gm45643-201ENSMUST00000211364 1484 ntBASIC14.36□□□□□ -0.11
RaraP11416 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
RaraP11416 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
RaraP11416 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RaraP11416 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
RaraP11416 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
RaraP11416 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC14.35□□□□□ -0.11
RaraP11416 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC14.35□□□□□ -0.11
RaraP11416 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Gm5867-201ENSMUST00000063197 592 ntBASIC14.35□□□□□ -0.11
RaraP11416 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
RaraP11416 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RaraP11416 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC14.35□□□□□ -0.11
RaraP11416 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
RaraP11416 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Cisd3-201ENSMUST00000107583 737 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC14.34□□□□□ -0.11
RaraP11416 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RaraP11416 Gm11524-201ENSMUST00000119349 807 ntBASIC14.34□□□□□ -0.11
RaraP11416 Gm6161-201ENSMUST00000121942 1102 ntBASIC14.34□□□□□ -0.11
RaraP11416 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC14.34□□□□□ -0.11
RaraP11416 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
RaraP11416 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
RaraP11416 Gm6254-201ENSMUST00000168178 1072 ntBASIC14.34□□□□□ -0.11
RaraP11416 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RaraP11416 Gm6153-201ENSMUST00000172004 1058 ntBASIC14.34□□□□□ -0.11
RaraP11416 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
RaraP11416 Gm27838-201ENSMUST00000184829 128 ntBASIC14.34□□□□□ -0.11
RaraP11416 Gm38144-201ENSMUST00000192790 465 ntBASIC14.34□□□□□ -0.11
RaraP11416 Gm5641-202ENSMUST00000198699 1080 ntBASIC14.34□□□□□ -0.11
RaraP11416 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 68.1 ms