Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Gm18624-201ENSMUST00000220966 658 ntBASIC12.54□□□□□ -0.4
Trim3Q9R1R2 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.54□□□□□ -0.4
Trim3Q9R1R2 AC154239.3-201ENSMUST00000226933 674 ntBASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 AC238940.1-201ENSMUST00000225106 1858 ntBASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 AC117194.1-201ENSMUST00000224847 3002 ntBASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim3Q9R1R2 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Gm9279-201ENSMUST00000223175 1606 ntBASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Gm18018-201ENSMUST00000198273 408 ntBASIC12.53□□□□□ -0.4
Trim3Q9R1R2 AC140375.2-201ENSMUST00000225283 584 ntBASIC12.53□□□□□ -0.4
Trim3Q9R1R2 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Gm6180-201ENSMUST00000065243 498 ntBASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Gm7002-201ENSMUST00000221386 2165 ntBASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim3Q9R1R2 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trim3Q9R1R2 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trim3Q9R1R2 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trim3Q9R1R2 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trim3Q9R1R2 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trim3Q9R1R2 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trim3Q9R1R2 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trim3Q9R1R2 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Trim3Q9R1R2 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trim3Q9R1R2 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Trim3Q9R1R2 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 74.7 ms