Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Gm6161-201ENSMUST00000121942 1102 ntBASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Gm6254-201ENSMUST00000168178 1072 ntBASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Gm6153-201ENSMUST00000172004 1058 ntBASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Gm27331-201ENSMUST00000183705 60 ntBASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Gm5641-202ENSMUST00000198699 1080 ntBASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 AC122305.4-201ENSMUST00000216159 1206 ntBASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Gm25857-201ENSMUST00000082788 129 ntBASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Cpsf3Q9QXK7 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Gm43134-201ENSMUST00000199434 1886 ntBASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Gm44291-201ENSMUST00000203102 2865 ntBASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cpsf3Q9QXK7 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Gm11618-201ENSMUST00000117946 267 ntBASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Gm38230-201ENSMUST00000193572 1159 ntBASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC14.27□□□□□ -0.13
Cpsf3Q9QXK7 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms