Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Mir7654-201ENSMUST00000185082 70 ntBASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Gm7558-201ENSMUST00000193221 1165 ntBASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Smc1aQ9CU62 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Gm15678-201ENSMUST00000117573 960 ntBASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Gm17795-201ENSMUST00000214505 757 ntBASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Smc1aQ9CU62 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Gm7899-201ENSMUST00000192935 1897 ntBASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Mir692-1-201ENSMUST00000102263 109 ntBASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Gm15957-201ENSMUST00000118893 974 ntBASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Gm18307-201ENSMUST00000206864 949 ntBASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Gm5356-201ENSMUST00000093326 615 ntBASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Gm37133-201ENSMUST00000192705 1922 ntBASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Smc1aQ9CU62 AC154527.2-201ENSMUST00000225256 1466 ntBASIC14.89□□□□□ -0.03
Smc1aQ9CU62 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Smc1aQ9CU62 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Smc1aQ9CU62 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Smc1aQ9CU62 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.88□□□□□ -0.03
Smc1aQ9CU62 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Smc1aQ9CU62 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Smc1aQ9CU62 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Smc1aQ9CU62 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Smc1aQ9CU62 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Smc1aQ9CU62 Gm11425-201ENSMUST00000119608 498 ntBASIC14.88□□□□□ -0.03
Smc1aQ9CU62 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Smc1aQ9CU62 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms