Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ccdc28aQ8CEI3 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ccdc28aQ8CEI3 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ccdc28aQ8CEI3 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ccdc28aQ8CEI3 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Gm7336-201ENSMUST00000107041 1232 ntBASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Gm15240-201ENSMUST00000118156 720 ntBASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 CT943659.1-201ENSMUST00000215459 326 ntBASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Gm17330-201ENSMUST00000221047 165 ntBASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC14.03□□□□□ -0.16
Ccdc28aQ8CEI3 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Kcnk16-202ENSMUST00000225596 2127 ntBASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Gm37015-201ENSMUST00000192763 1521 ntBASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 AC161252.3-201ENSMUST00000225465 1549 ntBASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ccdc28aQ8CEI3 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Gm13886-201ENSMUST00000117876 1183 ntBASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Gm24513-201ENSMUST00000174964 138 ntBASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Gm27397-201ENSMUST00000184997 107 ntBASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ccdc28aQ8CEI3 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ccdc28aQ8CEI3 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms