Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.5
Usp40Q8BWR4 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Gm45779-201ENSMUST00000212189 4064 ntBASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Mir7221-201ENSMUST00000184009 72 ntBASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 AC166051.1-201ENSMUST00000214313 210 ntBASIC18.14■□□□□ 0.49
Usp40Q8BWR4 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp40Q8BWR4 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp40Q8BWR4 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Morn2-202ENSMUST00000227729 656 ntBASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp40Q8BWR4 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Gm12502-201ENSMUST00000120197 444 ntBASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC18.11■□□□□ 0.49
Usp40Q8BWR4 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC18.11■□□□□ 0.49
Usp40Q8BWR4 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC18.11■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms