Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Mypopos-202ENSMUST00000205975 2321 ntBASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 BC001981-202ENSMUST00000191393 1545 ntBASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Gm3809-201ENSMUST00000180973 1006 ntBASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Sh3rf1Q69ZI1 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Gm8775-201ENSMUST00000170943 1327 ntBASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Gm45667-201ENSMUST00000210380 1316 ntBASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Gm15393-201ENSMUST00000120499 219 ntBASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Gm18624-201ENSMUST00000220966 658 ntBASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Gm7114-201ENSMUST00000190159 1789 ntBASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 AC159196.2-201ENSMUST00000224082 1622 ntBASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sh3rf1Q69ZI1 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Gm4782-201ENSMUST00000168705 2046 ntBASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC13.49□□□□□ -0.25
Sh3rf1Q69ZI1 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms