Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Limch1Q3UH68 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Limch1Q3UH68 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Limch1Q3UH68 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Limch1Q3UH68 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Limch1Q3UH68 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Limch1Q3UH68 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Limch1Q3UH68 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC15.67■□□□□ 0.1
Limch1Q3UH68 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Limch1Q3UH68 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Limch1Q3UH68 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Limch1Q3UH68 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Limch1Q3UH68 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Limch1Q3UH68 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Limch1Q3UH68 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Mir1894-201ENSMUST00000122802 81 ntBASIC15.66■□□□□ 0.1
Limch1Q3UH68 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Mir1982-201ENSMUST00000157368 74 ntBASIC15.66■□□□□ 0.1
Limch1Q3UH68 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Gm26787-201ENSMUST00000180474 608 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Gm43094-201ENSMUST00000196549 921 ntBASIC15.66■□□□□ 0.1
Limch1Q3UH68 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC15.66■□□□□ 0.1
Limch1Q3UH68 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Gm5161-201ENSMUST00000075243 853 ntBASIC15.66■□□□□ 0.1
Limch1Q3UH68 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC15.66■□□□□ 0.1
Limch1Q3UH68 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Limch1Q3UH68 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm12500-202ENSMUST00000186471 2428 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm45638-201ENSMUST00000211507 2878 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm13886-201ENSMUST00000117876 1183 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm12537-201ENSMUST00000119266 1002 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm12070-201ENSMUST00000119551 1002 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm12671-201ENSMUST00000119978 1002 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm13292-201ENSMUST00000120014 1000 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm12403-201ENSMUST00000121384 959 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm10359-201ENSMUST00000180167 1002 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm12033-201ENSMUST00000180654 1002 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm5559-201ENSMUST00000180755 1002 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm4335-201ENSMUST00000182581 1004 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC15.65■□□□□ 0.1
Limch1Q3UH68 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Limch1Q3UH68 AC166349.1-201ENSMUST00000220866 695 ntBASIC15.65■□□□□ 0.1
Limch1Q3UH68 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Limch1Q3UH68 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms