Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Gm18934-201ENSMUST00000216671 1044 ntBASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 AC124732.1-201ENSMUST00000221551 910 ntBASIC12.95□□□□□ -0.34
Col28a1Q2UY11 AC132863.2-201ENSMUST00000226643 799 ntBASIC12.95□□□□□ -0.34
Col28a1Q2UY11 AC149588.3-201ENSMUST00000227515 150 ntBASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Gm42480-201ENSMUST00000198434 2595 ntBASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Gm43463-201ENSMUST00000195967 1803 ntBASIC12.95□□□□□ -0.34
Col28a1Q2UY11 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Syt7-204ENSMUST00000223586 1344 ntBASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Gm45643-201ENSMUST00000211364 1484 ntBASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Gm15678-201ENSMUST00000117573 960 ntBASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Gm6539-201ENSMUST00000119157 1064 ntBASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Ighv1-51-201ENSMUST00000192903 354 ntBASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Gm4971-201ENSMUST00000205991 1108 ntBASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Mir125a-201ENSMUST00000083545 68 ntBASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 AC122314.1-201ENSMUST00000223056 2239 ntBASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Col28a1Q2UY11 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Gm6473-201ENSMUST00000188572 1210 ntBASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Gm7775-201ENSMUST00000218871 853 ntBASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col28a1Q2UY11 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col28a1Q2UY11 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC12.92□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms