Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col17a1Q07563 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col17a1Q07563 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col17a1Q07563 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Col17a1Q07563 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col17a1Q07563 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC19.93■□□□□ 0.78
Col17a1Q07563 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col17a1Q07563 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Col17a1Q07563 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col17a1Q07563 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col17a1Q07563 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col17a1Q07563 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Rpl7a-201ENSMUST00000102898 914 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Gm16166-201ENSMUST00000118291 787 ntBASIC19.92■□□□□ 0.78
Col17a1Q07563 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC19.92■□□□□ 0.78
Col17a1Q07563 Gm45310-201ENSMUST00000210436 275 ntBASIC19.92■□□□□ 0.78
Col17a1Q07563 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Col17a1Q07563 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Col17a1Q07563 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC19.92■□□□□ 0.78
Col17a1Q07563 Gm20773-202ENSMUST00000193306 1341 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Col17a1Q07563 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC19.92■□□□□ 0.78
Col17a1Q07563 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC19.92■□□□□ 0.78
Col17a1Q07563 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Col17a1Q07563 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC19.92■□□□□ 0.78
Col17a1Q07563 Trav10d-201ENSMUST00000103646 406 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Col17a1Q07563 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC19.92■□□□□ 0.78
Col17a1Q07563 Gm16538-201ENSMUST00000162407 442 ntTSL 2 BASIC19.92■□□□□ 0.78
Col17a1Q07563 Gm29135-201ENSMUST00000188411 612 ntTSL 5 BASIC19.92■□□□□ 0.78
Col17a1Q07563 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC19.92■□□□□ 0.78
Col17a1Q07563 Gm4157-201ENSMUST00000211647 679 ntBASIC19.92■□□□□ 0.78
Col17a1Q07563 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col17a1Q07563 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Camk2g-217ENSMUST00000226630 1937 ntBASIC19.91■□□□□ 0.78
Col17a1Q07563 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC19.91■□□□□ 0.78
Col17a1Q07563 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC19.91■□□□□ 0.78
Col17a1Q07563 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Gm21092-201ENSMUST00000178995 955 ntBASIC19.91■□□□□ 0.78
Col17a1Q07563 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col17a1Q07563 Gm9136-201ENSMUST00000193368 454 ntBASIC19.91■□□□□ 0.78
Col17a1Q07563 Ighv8-10-201ENSMUST00000199579 358 ntBASIC19.91■□□□□ 0.78
Col17a1Q07563 Olfr1347-205ENSMUST00000220413 964 ntBASIC19.91■□□□□ 0.78
Col17a1Q07563 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Col17a1Q07563 Gm10584-201ENSMUST00000207036 2628 ntBASIC19.91■□□□□ 0.78
Col17a1Q07563 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
Col17a1Q07563 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC19.9■□□□□ 0.78
Col17a1Q07563 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
Col17a1Q07563 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC19.9■□□□□ 0.78
Col17a1Q07563 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC19.9■□□□□ 0.78
Col17a1Q07563 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Col17a1Q07563 Cd63-ps-202ENSMUST00000154992 717 ntBASIC19.9■□□□□ 0.78
Col17a1Q07563 Gm22146-201ENSMUST00000157397 288 ntBASIC19.9■□□□□ 0.78
Col17a1Q07563 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC19.9■□□□□ 0.78
Col17a1Q07563 Itgb1bp1-202ENSMUST00000172834 801 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 Mir133a-1hg-201ENSMUST00000179771 395 ntTSL 3 BASIC19.9■□□□□ 0.78
Col17a1Q07563 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC19.9■□□□□ 0.78
Col17a1Q07563 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
Col17a1Q07563 AC125209.1-201ENSMUST00000225812 766 ntBASIC19.9■□□□□ 0.78
Col17a1Q07563 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col17a1Q07563 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms