Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdh11P55288 Gm6473-201ENSMUST00000188572 1210 ntBASIC12.15□□□□□ -0.46
Cdh11P55288 Gm29741-201ENSMUST00000192667 421 ntBASIC12.15□□□□□ -0.46
Cdh11P55288 Ighv1-25-201ENSMUST00000195638 345 ntBASIC12.15□□□□□ -0.46
Cdh11P55288 Hist1h2al-201ENSMUST00000091708 339 ntBASIC12.15□□□□□ -0.46
Cdh11P55288 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdh11P55288 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdh11P55288 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cdh11P55288 Zkscan14-203ENSMUST00000198959 2243 ntBASIC12.15□□□□□ -0.46
Cdh11P55288 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdh11P55288 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdh11P55288 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cdh11P55288 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
Cdh11P55288 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Cdh11P55288 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Cdh11P55288 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Cdh11P55288 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
Cdh11P55288 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Cdh11P55288 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC12.14□□□□□ -0.47
Cdh11P55288 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC12.14□□□□□ -0.47
Cdh11P55288 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC12.14□□□□□ -0.47
Cdh11P55288 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC12.14□□□□□ -0.47
Cdh11P55288 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC12.14□□□□□ -0.47
Cdh11P55288 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.14□□□□□ -0.47
Cdh11P55288 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC12.14□□□□□ -0.47
Cdh11P55288 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC12.14□□□□□ -0.47
Cdh11P55288 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Cdh11P55288 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Cdh11P55288 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC12.14□□□□□ -0.47
Cdh11P55288 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdh11P55288 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Cdh11P55288 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC12.13□□□□□ -0.47
Cdh11P55288 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC12.13□□□□□ -0.47
Cdh11P55288 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Gm7114-201ENSMUST00000190159 1789 ntBASIC12.13□□□□□ -0.47
Cdh11P55288 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Cdh11P55288 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 AC117194.1-201ENSMUST00000224847 3002 ntBASIC12.13□□□□□ -0.47
Cdh11P55288 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Cdh11P55288 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC12.13□□□□□ -0.47
Cdh11P55288 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC12.13□□□□□ -0.47
Cdh11P55288 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.13□□□□□ -0.47
Cdh11P55288 AL593843.1-201ENSMUST00000195891 145 ntBASIC12.13□□□□□ -0.47
Cdh11P55288 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC12.13□□□□□ -0.47
Cdh11P55288 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC12.13□□□□□ -0.47
Cdh11P55288 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Cdh11P55288 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Cdh11P55288 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC12.13□□□□□ -0.47
Cdh11P55288 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Cdh11P55288 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdh11P55288 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC12.13□□□□□ -0.47
Cdh11P55288 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms