Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC12.68□□□□□ -0.38
Lire1P11260 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Lire1P11260 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC12.68□□□□□ -0.38
Lire1P11260 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Lire1P11260 Gm6912-201ENSMUST00000117218 544 ntBASIC12.68□□□□□ -0.38
Lire1P11260 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC12.68□□□□□ -0.38
Lire1P11260 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC12.68□□□□□ -0.38
Lire1P11260 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC12.68□□□□□ -0.38
Lire1P11260 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC12.68□□□□□ -0.38
Lire1P11260 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Gm18018-201ENSMUST00000198273 408 ntBASIC12.68□□□□□ -0.38
Lire1P11260 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC12.68□□□□□ -0.38
Lire1P11260 Gm46209-201ENSMUST00000217912 553 ntBASIC12.68□□□□□ -0.38
Lire1P11260 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC12.68□□□□□ -0.38
Lire1P11260 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Lire1P11260 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Lire1P11260 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Lire1P11260 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Lire1P11260 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC12.68□□□□□ -0.38
Lire1P11260 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Lire1P11260 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Lire1P11260 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Lire1P11260 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC12.67□□□□□ -0.38
Lire1P11260 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Lire1P11260 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC12.67□□□□□ -0.38
Lire1P11260 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Lire1P11260 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
Lire1P11260 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Gm4875-201ENSMUST00000118257 786 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Lire1P11260 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Lire1P11260 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC12.67□□□□□ -0.38
Lire1P11260 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC12.67□□□□□ -0.38
Lire1P11260 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Lire1P11260 Gm29310-201ENSMUST00000185468 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21825-201ENSMUST00000185728 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm29109-201ENSMUST00000185895 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21896-201ENSMUST00000186520 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21873-201ENSMUST00000186728 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21794-201ENSMUST00000187056 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21880-201ENSMUST00000187275 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21826-201ENSMUST00000187451 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Gm21198-201ENSMUST00000188393 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Gm21749-201ENSMUST00000189343 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21901-201ENSMUST00000189568 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm29424-201ENSMUST00000189716 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm28599-201ENSMUST00000189838 694 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21867-201ENSMUST00000189917 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm29269-201ENSMUST00000190087 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21722-201ENSMUST00000190153 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm28423-201ENSMUST00000190701 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21899-201ENSMUST00000190745 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21910-201ENSMUST00000191163 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21849-201ENSMUST00000191571 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm28678-201ENSMUST00000191593 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm20910-201ENSMUST00000193268 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm37230-201ENSMUST00000194491 818 ntBASIC12.67□□□□□ -0.38
Lire1P11260 Gm21871-201ENSMUST00000194621 696 ntBASIC12.67□□□□□ -0.38
Lire1P11260 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lire1P11260 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC12.67□□□□□ -0.38
Lire1P11260 Gm45195-201ENSMUST00000205597 1008 ntBASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms